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Supporting Files for Schiebelhut LM, Puritz JB & Dawson MN (2018) "Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus" PNAS

Citation

Schiebelhut, Lauren (2018), Supporting Files for Schiebelhut LM, Puritz JB & Dawson MN (2018) "Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus" PNAS, UC Merced Dash, Dataset, https://doi.org/10.6071/M3WW84

Abstract

The data files associated with Schiebelhut LM, Puritz JB & Dawson MN (2018) "Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus" are deposited here, including: the commented bioinformatics code, raw SNP calls, filtered SNPs, and final haplotype calls.

Methods

Please see Schiebelhut et al. (2018) for detailed description of methods for data collection and processing.

Usage Notes

Raw sequence data are deposited in NCBI SRA (SRP136569).

Information about individual specimens used in analyses: Sample_metadata.xlsx

Commented bioinformatics code: CommentedBioinformaticsCode.html

Raw SNP file: TotalRawSNPs_keep.Pisaster_171005.recode.vcf

Filtered SNP file: SNP.DP3g98maf01_85INDoutFIL.NO2a.HWE.FIL.recode.vcf

Filtered haplotype file: SNP.DP3g98maf01_85INDoutFIL.NO2a.HWE.FIL.recode_RADHAP.genepop

 

References